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Shooting them in the body didn't seem to work. Go for the limbs, dismember them. That should do the job.
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Hangar 47

1. You would play as Gabe again. After the dialogue, a couple of enemies would storm your position. Kill them to begin a Free Look. Gabe would depart.

2. Weapon Upgrade #1: Look straight up at the ceiling during Free Look and snatch it out of the vent.

3. Text Log #1: After Free Look, Gabe would climb out of the control room by looking to his left. The log would be there between the console desk and the window.

4. A big brawl against the Super Slashers, Slashers, Female Slashers and Leapers would break out. Just keep plowing at them and if you had the Force Gun, shoot them when they got close. If the Females threw acid, throw it back.

5. Gabe and Lexine would back away from a big mob to the other side of the shuttle. Keep shooting. You would need to take some monsters out that are coming from the nearby vents as Lexine took a Slasher out on her own.

6. There was a large horde ahead and some of them are Exploders and Pregnants. Try to kill the Exploders from a long distance with something like the Line Gun and grab their pustules and throw them at the Pregnants. There are crates everywhere that you could hurl into the foes although they could get in the way of item collection if they are scattered around.

7. Weapon Upgrade #2: The moment that Gabe started moving forward after the Exploder battle. Keep the pointer on the right side of the screen. Gabe would turn to face Lexine and you would have a split-second to grab the upgrade which was located to the right of Lexine.

8. Audio Log #1: After Weapon Upgrade #2, Gabe would move forward and some more foes would bust out of the vents in the ground. Ignore them if you wanted the Audio Log which would be behind the pillar to your left. Again, you had less than a second to grab it although Gabe would give you a chance to snag it.

9. More Pregnants and other monsters would be ahead. Gabe and Lexine would battle around to the shuttle door and enter it. There was a Contact Beam inside. Replace any weapon that was low on ammo with it.

10. Weapon Upgrade #3: You could not miss this as Gabe and Lexine walked around the front of the shuttle.

11. Gabe would need to protect the shuttle while Lexine got it started. With the Contact Beam, you could pick the monsters off that approached by toasting the smaller creatures like the Swarms and Leapers with the Flamethrower. Once Nathan showed up, the group would escape and the game would end.